Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs6063296 chr20:47246937 A/T 0 503 31.47 33.1 6.78 KM Plot
THCA rs6063297 chr20:47247774 C/T 0 503 31.47 33.1 7.77 KM Plot
THCA rs6063311 chr20:47325315 C/T 4.37E-9 502 31.53 32.1 18.22 KM Plot
THCA rs6063314 chr20:47353106 T/C 8.06E-9 503 31.47 32.9 18.22 KM Plot
THCA rs60641955 chr8:58135662 G/GT 1.22E-15 494 31.37 37.97 32.1 KM Plot
THCA rs6066773 chr20:47218804 C/T 0 503 31.6 32.1 6.78 KM Plot
THCA rs6066774 chr20:47223278 G/C 0 501 31.5 32.1 6.78 KM Plot
THCA rs6066777 chr20:47225857 T/C 0 503 31.6 32.1 6.78 KM Plot
THCA rs6066779 chr20:47226250 A/G 1.67E-15 503 5.8 32.07 31.6 KM Plot
THCA rs6066789 chr20:47247764 A/G 1.08E-6 503 31.68 31.35 30.63 KM Plot
THCA rs6066790 chr20:47251651 C/T 0 499 31.47 33.27 6.78 KM Plot
THCA rs6066799 chr20:47257839 A/G 0 499 31.6 32.1 6.78 KM Plot
THCA rs6066804 chr20:47262322 G/A 1.67E-15 497 31.68 31.28 5.8 KM Plot
THCA rs6066807 chr20:47267144 C/T 0 498 31.47 32.5 6.78 KM Plot
THCA rs6066809 chr20:47273119 T/C 0 496 31.68 32.07 6.78 KM Plot